mac mpi
This commit is contained in:
Bassem Girgis
BIN
macx64/mpi/mpich/bin/hydra_nameserver
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macx64/mpi/mpich/bin/hydra_nameserver
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macx64/mpi/mpich/bin/hydra_persist
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macx64/mpi/mpich/bin/hydra_persist
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macx64/mpi/mpich/bin/hydra_pmi_proxy
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macx64/mpi/mpich/bin/hydra_pmi_proxy
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macx64/mpi/mpich/bin/mpicc
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macx64/mpi/mpich/bin/mpicc
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#! /bin/bash
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#
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# (C) 2006 by Argonne National Laboratory.
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# See COPYRIGHT in top-level directory.
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#
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# mpicc
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# Simple script to compile and/or link MPI programs.
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# This script knows the default flags and libraries, and can handle
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# alternative C compilers and the associated flags and libraries.
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# The important terms are:
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# includedir, libdir - Directories containing an *installed* mpich
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# prefix, execprefix - Often used to define includedir and libdir
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# CC - C compiler
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# WRAPPER_CFLAGS - Any special flags needed to compile
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# WRAPPER_LDFLAGS - Any special flags needed to link
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# WRAPPER_LIBS - Any special libraries needed in order to link
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#
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# We assume that (a) the C compiler can both compile and link programs
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#
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# Handling of command-line options:
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# This is a little tricky because some options may contain blanks.
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#
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# Special issues with shared libraries - todo
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#
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# --------------------------------------------------------------------------
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# Set the default values of all variables.
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#
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# Directory locations: Fixed for any MPI implementation.
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# Set from the directory arguments to configure (e.g., --prefix=/usr/local)
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prefix=/Users/brgirgis/Documents/code/idiscovery/cpp-thirdparty-src/mpi/mpich/install/3.3.1
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exec_prefix=/Users/brgirgis/Documents/code/idiscovery/cpp-thirdparty-src/mpi/mpich/install/3.3.1
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sysconfdir=/Users/brgirgis/Documents/code/idiscovery/cpp-thirdparty-src/mpi/mpich/install/3.3.1/etc
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includedir=/Users/brgirgis/Documents/code/idiscovery/cpp-thirdparty-src/mpi/mpich/install/3.3.1/include
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libdir=/Users/brgirgis/Documents/code/idiscovery/cpp-thirdparty-src/mpi/mpich/install/3.3.1/lib
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# Default settings for compiler, flags, and libraries.
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# Determined by a combination of environment variables and tests within
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# configure (e.g., determining whehter -lsocket is needee)
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CC="gcc"
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MPICH_VERSION="3.3.1"
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enable_wrapper_rpath="yes"
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# How to pass a linker flag through the compiler.
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wl="-Wl,"
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# Static library suffix (normally "a").
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libext="a"
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# Shared library suffix (normally "so").
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shlibext="dylib"
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# Format of library name prefix.
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libname_spec="lib\$name"
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# Library names that the linker finds when passed -lNAME.
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library_names_spec="\$libname\$shrext"
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# Flag to hardcode $libdir into a binary during linking.
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# This must work even if $libdir does not exist.
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hardcode_libdir_flag_spec=""
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# Whether we need a single -rpath flag with a separated argument.
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hardcode_libdir_separator=""
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# Set to yes if using DIR/libNAME.so during linking hardcodes DIR into the
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# resulting binary.
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hardcode_direct="no"
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# Set to yes if using the -LDIR flag during linking hardcodes DIR into the
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# resulting binary.
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hardcode_minus_L="no"
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# Internal variables
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# Show is set to echo to cause the compilation command to be echoed instead
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# of executed.
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Show=
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#
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# End of initialization of variables
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#---------------------------------------------------------------------
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# Environment Variables.
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# The environment variables MPICH_CC may be used to override the
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# default choices.
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# In addition, if there is a file $sysconfdir/mpicc-$CCname.conf,
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# where CCname is the name of the compiler with all spaces replaced by hyphens
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# (e.g., "cc -64" becomes "cc--64", that file is sources, allowing other
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# changes to the compilation environment. See the variables used by the
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# script (defined above)
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# Added MPICH_CC_OLD, MPICH_CC can be used to prefix CC with external utility,
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# e.g. setenv MPICH_CC 'eval linkcache $MPICH_CC_OLD'
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if [ -n "$MPICH_CC" ] ; then
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MPICH_CC_OLD="$CC"
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CC="$MPICH_CC"
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CCname=`echo $CC | sed 's/ /-/g'`
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if [ -s $sysconfdir/mpicc-$CCname.conf ] ; then
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. $sysconfdir/mpicc-$CCname.conf
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fi
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fi
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# Allow a profiling option to be selected through an environment variable
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if [ -n "$MPICC_PROFILE" ] ; then
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profConf=$MPICC_PROFILE
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fi
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#
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# ------------------------------------------------------------------------
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# Argument processing.
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# This is somewhat awkward because of the handling of arguments within
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# the shell. We want to handle arguments that include spaces without
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# loosing the spacing (an alternative would be to use a more powerful
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# scripting language that would allow us to retain the array of values,
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# which the basic (rather than enhanced) Bourne shell does not.
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#
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# Look through the arguments for arguments that indicate compile only.
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# If these are *not* found, add the library options
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linking=yes
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allargs=("$@")
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argno=0
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interlib_deps=yes
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static_mpi=no
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for arg in "$@" ; do
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# Set addarg to no if this arg should be ignored by the C compiler
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addarg=yes
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case "$arg" in
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# ----------------------------------------------------------------
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# Compiler options that affect whether we are linking or no
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-c|-S|-E|-M|-MM)
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# The compiler links by default
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linking=no
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;;
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# ----------------------------------------------------------------
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# Options that control how we use mpicc (e.g., -show,
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# -cc=* -config=*
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-static)
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interlib_deps=no
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;;
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-static-mpi)
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interlib_deps=no
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static_mpi=yes
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addarg=no
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;;
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-echo)
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addarg=no
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set -x
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;;
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-cc=*)
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CC=`echo A$arg | sed -e 's/A-cc=//g'`
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addarg=no
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;;
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-show)
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addarg=no
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||||
Show=echo
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||||
;;
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||||
-config=*)
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||||
addarg=no
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CCname=`echo A$arg | sed -e 's/A-config=//g'`
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if [ -s "$sysconfdir/mpicc-$CCname.conf" ] ; then
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. "$sysconfdir/mpicc-$CCname.conf"
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else
|
||||
echo "Configuration file mpicc-$CCname.conf not found"
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fi
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||||
;;
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-compile-info|-compile_info)
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# -compile_info included for backward compatibility
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Show=echo
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addarg=no
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;;
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-link-info|-link_info)
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# -link_info included for backward compatibility
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Show=echo
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addarg=no
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;;
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-v)
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||||
# Pass this argument to the compiler as well.
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echo "mpicc for MPICH version $MPICH_VERSION"
|
||||
# if there is only 1 argument, it must be -v.
|
||||
if [ "$#" -eq "1" ] ; then
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linking=no
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||||
fi
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||||
;;
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||||
-profile=*)
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||||
# Pass the name of a profiling configuration. As
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# a special case, lib<name>.so or lib<name>.la may be used
|
||||
# if the library is in $libdir
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||||
profConf=`echo A$arg | sed -e 's/A-profile=//g'`
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||||
addarg=no
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||||
# Loading the profConf file is handled below
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||||
;;
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-nativelinking)
|
||||
# Internal option to use native compiler for linking without MPI libraries
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||||
nativelinking=yes
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||||
addarg=no
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||||
;;
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-help)
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||||
NC=`echo "$CC" | sed 's%\/% %g' | awk '{print $NF}' -`
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if [ -f "$sysconfdir/mpixxx_opts.conf" ] ; then
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||||
. $sysconfdir/mpixxx_opts.conf
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echo " -cc=xxx - Reset the native compiler to xxx."
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||||
else
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||||
if [ -f "./mpixxx_opts.conf" ] ; then
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. ./mpixxx_opts.conf
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echo " -cc=xxx - Reset the native compiler to xxx."
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||||
fi
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||||
fi
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||||
exit 0
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;;
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*)
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;;
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esac
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if [ $addarg = no ] ; then
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unset allargs[$argno]
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fi
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# Some versions of bash do not accept ((argno++))
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argno=`expr $argno + 1`
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done
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||||
if [ $# -eq 0 ] ; then
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||||
echo "Error: Command line argument is needed!"
|
||||
"$0" -help
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||||
exit 1
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||||
fi
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||||
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||||
# -----------------------------------------------------------------------
|
||||
# Derived variables. These are assembled from variables set from the
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||||
# default, environment, configuration file (if any) and command-line
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# options (if any)
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||||
|
||||
PROFILE_FOO=
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||||
# Handle the case of a profile switch
|
||||
if [ -n "$profConf" ] ; then
|
||||
profConffile=
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||||
if [ -s "$libdir/lib$profConf.a" -o -s "$libdir/lib$profConf.so" ] ; then
|
||||
PROFILE_FOO="-l$profConf"
|
||||
elif [ -s "$sysconfdir/$profConf.conf" ] ; then
|
||||
profConffile="$sysconfdir/$profConf.conf"
|
||||
elif [ -s "$profConf.conf" ] ; then
|
||||
profConffile="$profConf.conf"
|
||||
else
|
||||
echo "Profiling configuration file $profConf.conf not found in $sysconfdir"
|
||||
fi
|
||||
if [ -n "$profConffile" -a -s "$profConffile" ] ; then
|
||||
. $profConffile
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||||
fi
|
||||
fi
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||||
final_cflags=" "
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||||
final_cppflags=" "
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||||
final_ldflags=" -Wl,-flat_namespace"
|
||||
final_libs=""
|
||||
if test "yes" = "no" -o "${interlib_deps}" = "no" ; then
|
||||
final_ldflags="${final_ldflags} -Wl,-flat_namespace"
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||||
final_libs="${final_libs} -lm -lpthread "
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||||
fi
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||||
|
||||
# -----------------------------------------------------------------------
|
||||
#
|
||||
# A temporary statement to invoke the compiler
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||||
# Place the -L before any args incase there are any mpi libraries in there.
|
||||
# Eventually, we'll want to move this after any non-MPI implementation
|
||||
# libraries.
|
||||
# We use a single invocation of the compiler. This will be adequate until
|
||||
# we run into a system that uses a separate linking command. With any luck,
|
||||
# such archaic systems are no longer with us. This also lets us
|
||||
# accept any argument; we don't need to know if we've seen a source
|
||||
# file or an object file. Instead, we just check for an option that
|
||||
# suppressing linking, such as -c or -M.
|
||||
if [ "$linking" = yes ] ; then
|
||||
# Attempt to encode rpath info into the executable if the user has not
|
||||
# disabled rpath usage and some flavor of rpath makes sense on this
|
||||
# platform.
|
||||
# TODO configure and config.rpath are computing more sophisticated rpath
|
||||
# schemes than this simple one. Consider updating this logic accordingly.
|
||||
if test "X$enable_wrapper_rpath" = "Xyes" ; then
|
||||
eval rpath_flags=\"${hardcode_libdir_flag_spec}\"
|
||||
else
|
||||
rpath_flags=""
|
||||
fi
|
||||
|
||||
if [ "$nativelinking" = yes ] ; then
|
||||
$Show $CC ${final_cppflags} $PROFILE_INCPATHS ${final_cflags} ${final_ldflags} "${allargs[@]}" -I$includedir
|
||||
rc=$?
|
||||
else
|
||||
if [ "$static_mpi" = no ] ; then
|
||||
$Show $CC ${final_cppflags} $PROFILE_INCPATHS ${final_cflags} ${final_ldflags} "${allargs[@]}" -I$includedir -L$libdir $PROFILE_PRELIB $PROFILE_FOO $rpath_flags -lmpi -lpmpi $PROFILE_POSTLIB ${final_libs}
|
||||
else
|
||||
fabric_dep=""
|
||||
if [ "" = yes ] ; then
|
||||
fabric_dep=`pkg-config --static --libs $libdir/pkgconfig/libfabric.pc`
|
||||
fabric_dep=`echo $fabric_dep | sed 's/-lfabric//'`
|
||||
elif [ -f /lib/pkgconfig/libfabric.pc ] ; then
|
||||
fabric_dep=`pkg-config --static --libs /lib/pkgconfig/libfabric.pc`
|
||||
else
|
||||
fabric_dep=`pkg-config --static --libs libfabric`
|
||||
fi
|
||||
$Show $CC ${final_cppflags} $PROFILE_INCPATHS ${final_cflags} ${final_ldflags} "${allargs[@]}" -I$includedir -L$libdir $PROFILE_PRELIB $PROFILE_FOO $rpath_flags $libdir/libmpi.a -lpmpi $PROFILE_POSTLIB ${final_libs} ${fabric_dep}
|
||||
fi
|
||||
rc=$?
|
||||
fi
|
||||
else
|
||||
$Show $CC ${final_cppflags} $PROFILE_INCPATHS ${final_cflags} "${allargs[@]}" -I$includedir
|
||||
rc=$?
|
||||
fi
|
||||
|
||||
exit $rc
|
||||
BIN
macx64/mpi/mpich/bin/mpichversion
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macx64/mpi/mpich/bin/mpichversion
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1
macx64/mpi/mpich/bin/mpiexec
Symbolic link
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macx64/mpi/mpich/bin/mpiexec
Symbolic link
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|
||||
mpiexec.hydra
|
||||
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macx64/mpi/mpich/bin/mpiexec.hydra
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macx64/mpi/mpich/bin/mpiexec.hydra
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1
macx64/mpi/mpich/bin/mpirun
Symbolic link
1
macx64/mpi/mpich/bin/mpirun
Symbolic link
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|
||||
mpiexec.hydra
|
||||
BIN
macx64/mpi/mpich/bin/mpivars
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macx64/mpi/mpich/bin/mpivars
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127
macx64/mpi/mpich/bin/parkill
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macx64/mpi/mpich/bin/parkill
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|
||||
#! /usr/bin/perl
|
||||
# -*- Mode: perl; -*-
|
||||
#
|
||||
# Kill all processes running a specified command
|
||||
#
|
||||
# Many systems also have the "killall" command; this should be used instead
|
||||
# if it is available.
|
||||
#
|
||||
# This script relies on the ps command; where possible, it uses the
|
||||
# /proc/<pid>/cmdline interface to more reliably access the commandline
|
||||
# (to avoid matching command line parameters as if they were functions).
|
||||
#
|
||||
$user = $ENV{'LOGNAME'};
|
||||
$progname = "";
|
||||
$noaddresses = 1;
|
||||
$debug = 0;
|
||||
$verbose = 0;
|
||||
$testing = 0;
|
||||
foreach $_ (@ARGV) {
|
||||
if (/-debug/) {
|
||||
$debug = 1;
|
||||
}
|
||||
elsif (/-verbose/) {
|
||||
$verbose = 1;
|
||||
}
|
||||
elsif (/-user=(.*)/) {
|
||||
$user = $1;
|
||||
}
|
||||
elsif (/-help/ || /-usage/) {
|
||||
print STDOUT "$0 [ -debug ] [ -verbose ] [ -user=name ] program\n";
|
||||
print STDOUT "Kill all processes running \"program\". To use the -user option
|
||||
you must have superuser privilege.\n";
|
||||
exit(1);
|
||||
}
|
||||
$progname = $_;
|
||||
}
|
||||
|
||||
if ( $progname eq "" ) {
|
||||
print STDERR "You must specify a program name\n";
|
||||
exit(1);
|
||||
}
|
||||
|
||||
print "user is $user\n" if $debug;
|
||||
#
|
||||
# Get pids
|
||||
$remoteps = "ps";
|
||||
$sysname=`uname -s`;
|
||||
chop $sysname;
|
||||
# Try to get nicer behavior from GNU ps.
|
||||
$ENV{'COLUMNS'} = 200;
|
||||
$ENV{'PS_PERSONALITY'} = "linux";
|
||||
if ($sysname eq "Linux") {
|
||||
print "linux style ps\n" if $debug;
|
||||
# The -width option can cause trouble, even with GNU ps, if the ps
|
||||
# program either doesn't support it or
|
||||
#$psopts = "-width 200 -lfu"; # LINUX
|
||||
$psopts = "-lfu"; # LINUX
|
||||
$pidloc = 3; # 4 sometimes?
|
||||
}
|
||||
elsif ($sysname eq "SunOS" || $sysname eq "IRIX64") {
|
||||
print "solaris style ps\n" if $debug;
|
||||
$psopts = "-fu"; # Solaris
|
||||
$pidloc = 2;
|
||||
}
|
||||
elsif ($sysname eq "OSF1" ) {
|
||||
$psopts = "-fu";
|
||||
$pidloc = 1;
|
||||
}
|
||||
elsif ($sysname eq "Darwin") {
|
||||
$psopts = "-aux -U";
|
||||
$pidloc = 1;
|
||||
}
|
||||
else {
|
||||
print STDERR "Unsupported system \"$sysname\"\n";
|
||||
exit(1);
|
||||
}
|
||||
|
||||
open( FD, "$remoteps $psopts $user |" ) || die "Cannot execute ps\n";
|
||||
|
||||
while (<FD>) {
|
||||
print $_ if $verbose;
|
||||
# Skip lines that may match this command
|
||||
if (/tcsh/) { next; }
|
||||
if (/grep/) { next; }
|
||||
if (/perl/) { next; }
|
||||
if (/\/bin\/sh /) { next; }
|
||||
if ($progname ne "mpiexec" && /mpiexec/) { next; }
|
||||
print $_ if $debug;
|
||||
|
||||
my @items = split(/\s+/);
|
||||
my $pid = $items[$pidloc];
|
||||
print "PID for this job is $pid\n" if $debug;
|
||||
my $procfile = "/proc/$pid/cmdline";
|
||||
print "Looking for $procfile\n" if $debug;
|
||||
# We *CANNOT USE* -s with a file in /proc because -s filename returns
|
||||
# false alwyas ! (BUG BUG BUG). Instead, we try to open and read from it
|
||||
$rc = open PFD, "<$procfile";
|
||||
if ($rc) {
|
||||
my $cmdline = <PFD>;
|
||||
$cmdline =~ s/\r?\n//;
|
||||
print "Cmdline in /proc/$pid is $cmdline\n" if $debug;
|
||||
if ($cmdline =~ /^$progname/ || $cmdline =~ /^\.\/$progname/) {
|
||||
print "Found $progname in /proc/$pid/cmdline\n" if $debug;
|
||||
$pids[$#pids+1] = @items[$pidloc];
|
||||
}
|
||||
close PFD;
|
||||
}
|
||||
else {
|
||||
# Just try to match the commandline to the entire ps output.
|
||||
if (/$progname/) {
|
||||
$pids[$#pids+1] = @items[$pidloc];
|
||||
}
|
||||
}
|
||||
}
|
||||
close FD;
|
||||
|
||||
if ($#pids >= 0) {
|
||||
print "Processes to kill are " . join(',',@pids) . "\n" if $debug;
|
||||
if ($testing) { exit 0; }
|
||||
foreach my $sig ("INT","QUIT","KILL") {
|
||||
my $cnt = kill $sig, @pids;
|
||||
print "Signaled (SIG$sig) $cnt processes\n" if ($debug || $verbose);
|
||||
}
|
||||
}
|
||||
else {
|
||||
print "No processes matched $progname for user $user\n" if $verbose;
|
||||
}
|
||||
Reference in New Issue
Block a user