add boost on mac

This commit is contained in:
Bassem Girgis
2019-08-10 16:38:17 -05:00
parent 861b918727
commit be945cb63b
14105 changed files with 2714968 additions and 0 deletions

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// Copyright (C) 2007 Douglas Gregor
// Use, modification and distribution is subject to the Boost Software
// License, Version 1.0. (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// This file contains code for the distributed adjacency list's
// message handlers. It should not be included directly by users.
#ifndef BOOST_GRAPH_DISTRIBUTED_ADJLIST_HANDLERS_HPP
#define BOOST_GRAPH_DISTRIBUTED_ADJLIST_HANDLERS_HPP
#ifndef BOOST_GRAPH_USE_MPI
#error "Parallel BGL files should not be included unless <boost/graph/use_mpi.hpp> has been included"
#endif
#include <boost/graph/parallel/simple_trigger.hpp>
#include <boost/graph/parallel/detail/untracked_pair.hpp>
namespace boost {
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
void
PBGL_DISTRIB_ADJLIST_TYPE::
setup_triggers()
{
using boost::graph::parallel::simple_trigger;
simple_trigger(process_group_, msg_add_vertex_with_property, this,
&adjacency_list::handle_add_vertex_with_property);
simple_trigger(process_group_, msg_add_vertex_with_property_and_reply, this,
&adjacency_list::handle_add_vertex_with_property_and_reply);
simple_trigger(process_group_, msg_add_edge, this,
&adjacency_list::handle_add_edge);
simple_trigger(process_group_, msg_add_edge_with_reply, this,
&adjacency_list::handle_add_edge_with_reply);
simple_trigger(process_group_, msg_add_edge_with_property, this,
&adjacency_list::handle_add_edge_with_property);
simple_trigger(process_group_, msg_add_edge_with_property_and_reply, this,
&adjacency_list::handle_add_edge_with_property_and_reply);
simple_trigger(process_group_, msg_nonlocal_edge, this,
&adjacency_list::handle_nonlocal_edge);
simple_trigger(process_group_, msg_remove_edge, this,
&adjacency_list::handle_remove_edge);
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
void
PBGL_DISTRIB_ADJLIST_TYPE::
handle_add_vertex_with_property(int source, int tag,
const vertex_property_type& data,
trigger_receive_context)
{
vertex_descriptor v(this->processor(),
add_vertex(this->build_vertex_property(data),
this->base()));
if (on_add_vertex)
on_add_vertex(v, *this);
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
typename PBGL_DISTRIB_ADJLIST_TYPE::local_vertex_descriptor
PBGL_DISTRIB_ADJLIST_TYPE::
handle_add_vertex_with_property_and_reply(int source, int tag,
const vertex_property_type& data,
trigger_receive_context)
{
// Try to find a vertex with this name
local_vertex_descriptor local_v
= add_vertex(this->build_vertex_property(data), this->base());
vertex_descriptor v(processor(), local_v);
if (on_add_vertex)
on_add_vertex(v, *this);
return local_v;
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
void
PBGL_DISTRIB_ADJLIST_TYPE::
handle_add_edge(int source, int tag, const msg_add_edge_data& data,
trigger_receive_context)
{
add_edge(vertex_descriptor(processor(), data.source),
data.target, *this);
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
boost::parallel::detail::untracked_pair<typename PBGL_DISTRIB_ADJLIST_TYPE::edge_descriptor, bool>
PBGL_DISTRIB_ADJLIST_TYPE::
handle_add_edge_with_reply(int source, int tag, const msg_add_edge_data& data,
trigger_receive_context)
{
std::pair<typename PBGL_DISTRIB_ADJLIST_TYPE::edge_descriptor, bool> p =
add_edge(vertex_descriptor(processor(), data.source),data.target, *this);
return p;
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
void
PBGL_DISTRIB_ADJLIST_TYPE::
handle_add_edge_with_property(int source, int tag,
const msg_add_edge_with_property_data& data,
trigger_receive_context)
{
add_edge(vertex_descriptor(processor(), data.source),
data.target, data.get_property(), *this);
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
boost::parallel::detail::untracked_pair<typename PBGL_DISTRIB_ADJLIST_TYPE::edge_descriptor, bool>
PBGL_DISTRIB_ADJLIST_TYPE::
handle_add_edge_with_property_and_reply
(int source, int tag,
const msg_add_edge_with_property_data& data,
trigger_receive_context)
{
std::pair<typename PBGL_DISTRIB_ADJLIST_TYPE::edge_descriptor, bool> p =
add_edge(vertex_descriptor(processor(), data.source),
data.target, data.get_property(), *this);
return p;
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
void
PBGL_DISTRIB_ADJLIST_TYPE::
handle_nonlocal_edge(int source, int tag,
const msg_nonlocal_edge_data& data,
trigger_receive_context)
{
add_remote_edge(data, source, directed_selector());
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
void
PBGL_DISTRIB_ADJLIST_TYPE::
handle_remove_edge(int source, int tag,
const msg_remove_edge_data& data,
trigger_receive_context)
{
remove_local_edge(data, source, directed_selector());
}
}
#endif // BOOST_GRAPH_DISTRIBUTED_ADJLIST_HANDLERS_HPP

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// Copyright (C) 2007 Douglas Gregor
// Use, modification and distribution is subject to the Boost Software
// License, Version 1.0. (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// This file contains code for the distributed adjacency list's
// initializations. It should not be included directly by users.
#ifndef BOOST_GRAPH_DISTRIBUTED_ADJLIST_INITIALIZE_HPP
#define BOOST_GRAPH_DISTRIBUTED_ADJLIST_INITIALIZE_HPP
#ifndef BOOST_GRAPH_USE_MPI
#error "Parallel BGL files should not be included unless <boost/graph/use_mpi.hpp> has been included"
#endif
namespace boost {
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
template<typename EdgeIterator>
void
PBGL_DISTRIB_ADJLIST_TYPE::
initialize(EdgeIterator first, EdgeIterator last,
vertices_size_type, const base_distribution_type& distribution,
vecS)
{
process_id_type id = process_id(process_group_);
while (first != last) {
if ((process_id_type)distribution(first->first) == id) {
vertex_descriptor source(id, distribution.local(first->first));
vertex_descriptor target(distribution(first->second),
distribution.local(first->second));
add_edge(source, target, *this);
}
++first;
}
synchronize(process_group_);
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
template<typename EdgeIterator, typename EdgePropertyIterator>
void
PBGL_DISTRIB_ADJLIST_TYPE::
initialize(EdgeIterator first, EdgeIterator last,
EdgePropertyIterator ep_iter,
vertices_size_type, const base_distribution_type& distribution,
vecS)
{
process_id_type id = process_id(process_group_);
while (first != last) {
if (static_cast<process_id_type>(distribution(first->first)) == id) {
vertex_descriptor source(id, distribution.local(first->first));
vertex_descriptor target(distribution(first->second),
distribution.local(first->second));
add_edge(source, target, *ep_iter, *this);
}
++first;
++ep_iter;
}
synchronize(process_group_);
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
template<typename EdgeIterator, typename EdgePropertyIterator,
typename VertexListS>
void
PBGL_DISTRIB_ADJLIST_TYPE::
initialize(EdgeIterator first, EdgeIterator last,
EdgePropertyIterator ep_iter,
vertices_size_type n, const base_distribution_type& distribution,
VertexListS)
{
using boost::parallel::inplace_all_to_all;
typedef vertices_size_type vertex_number_t;
typedef typename std::iterator_traits<EdgePropertyIterator>::value_type
edge_property_init_t;
typedef std::pair<vertex_descriptor, vertex_number_t>
st_pair;
typedef std::pair<st_pair, edge_property_init_t> delayed_edge_t;
process_group_type pg = process_group();
process_id_type id = process_id(pg);
// Vertex indices
std::vector<local_vertex_descriptor> index_to_vertex;
index_to_vertex.reserve(num_vertices(*this));
BGL_FORALL_VERTICES_T(v, base(), inherited)
index_to_vertex.push_back(v);
// The list of edges we can't add immediately.
std::vector<delayed_edge_t> delayed_edges;
std::vector<std::vector<vertex_number_t> > descriptor_requests;
descriptor_requests.resize(num_processes(pg));
// Add all of the edges we can, up to the point where we run
// into a descriptor we don't know.
while (first != last) {
if (distribution(first->first) == id) {
if (distribution(first->second) != id) break;
vertex_descriptor source
(id, index_to_vertex[distribution.local(first->first)]);
vertex_descriptor target
(distribution(first->second),
index_to_vertex[distribution.local(first->second)]);
add_edge(source, target, *ep_iter, *this);
}
++first;
++ep_iter;
}
// Queue all of the remaining edges and determine the set of
// descriptors we need to know about.
while (first != last) {
if (distribution(first->first) == id) {
vertex_descriptor source
(id, index_to_vertex[distribution.local(first->first)]);
process_id_type dest = distribution(first->second);
if (dest != id) {
descriptor_requests[dest]
.push_back(distribution.local(first->second));
// Compact request list if we need to
if (descriptor_requests[dest].size() >
distribution.block_size(dest, n)) {
std::sort(descriptor_requests[dest].begin(),
descriptor_requests[dest].end());
descriptor_requests[dest].erase(
std::unique(descriptor_requests[dest].begin(),
descriptor_requests[dest].end()),
descriptor_requests[dest].end());
}
}
// Save the edge for later
delayed_edges.push_back
(delayed_edge_t(st_pair(source, first->second), *ep_iter));
}
++first;
++ep_iter;
}
// Compact descriptor requests
for (process_id_type dest = 0; dest < num_processes(pg); ++dest) {
std::sort(descriptor_requests[dest].begin(),
descriptor_requests[dest].end());
descriptor_requests[dest].erase(
std::unique(descriptor_requests[dest].begin(),
descriptor_requests[dest].end()),
descriptor_requests[dest].end());
}
// Send out all of the descriptor requests
std::vector<std::vector<vertex_number_t> > in_descriptor_requests;
in_descriptor_requests.resize(num_processes(pg));
inplace_all_to_all(pg, descriptor_requests, in_descriptor_requests);
// Reply to all of the descriptor requests
std::vector<std::vector<local_vertex_descriptor> >
descriptor_responses;
descriptor_responses.resize(num_processes(pg));
for (process_id_type dest = 0; dest < num_processes(pg); ++dest) {
for (std::size_t i = 0; i < in_descriptor_requests[dest].size(); ++i) {
local_vertex_descriptor v =
index_to_vertex[in_descriptor_requests[dest][i]];
descriptor_responses[dest].push_back(v);
}
in_descriptor_requests[dest].clear();
}
in_descriptor_requests.clear();
inplace_all_to_all(pg, descriptor_responses);
// Add the queued edges
for(typename std::vector<delayed_edge_t>::iterator i
= delayed_edges.begin(); i != delayed_edges.end(); ++i) {
process_id_type dest = distribution(i->first.second);
local_vertex_descriptor tgt_local;
if (dest == id) {
tgt_local = index_to_vertex[distribution.local(i->first.second)];
} else {
std::vector<vertex_number_t>& requests = descriptor_requests[dest];
typename std::vector<vertex_number_t>::iterator pos =
std::lower_bound(requests.begin(), requests.end(),
distribution.local(i->first.second));
tgt_local = descriptor_responses[dest][pos - requests.begin()];
}
add_edge(i->first.first, vertex_descriptor(dest, tgt_local),
i->second, *this);
}
synchronize(process_group_);
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
template<typename EdgeIterator, typename VertexListS>
void
PBGL_DISTRIB_ADJLIST_TYPE::
initialize(EdgeIterator first, EdgeIterator last,
vertices_size_type n, const base_distribution_type& distribution,
VertexListS)
{
using boost::parallel::inplace_all_to_all;
typedef vertices_size_type vertex_number_t;
typedef std::pair<vertex_descriptor, vertex_number_t> delayed_edge_t;
process_group_type pg = process_group();
process_id_type id = process_id(pg);
// Vertex indices
std::vector<local_vertex_descriptor> index_to_vertex;
index_to_vertex.reserve(num_vertices(*this));
BGL_FORALL_VERTICES_T(v, base(), inherited)
index_to_vertex.push_back(v);
// The list of edges we can't add immediately.
std::vector<delayed_edge_t> delayed_edges;
std::vector<std::vector<vertex_number_t> > descriptor_requests;
descriptor_requests.resize(num_processes(pg));
// Add all of the edges we can, up to the point where we run
// into a descriptor we don't know.
while (first != last) {
if (distribution(first->first) == id) {
if (distribution(first->second) != id) break;
vertex_descriptor source
(id, index_to_vertex[distribution.local(first->first)]);
vertex_descriptor target
(distribution(first->second),
index_to_vertex[distribution.local(first->second)]);
add_edge(source, target, *this);
}
++first;
}
// Queue all of the remaining edges and determine the set of
// descriptors we need to know about.
while (first != last) {
if (distribution(first->first) == id) {
vertex_descriptor source
(id, index_to_vertex[distribution.local(first->first)]);
process_id_type dest = distribution(first->second);
if (dest != id) {
descriptor_requests[dest]
.push_back(distribution.local(first->second));
// Compact request list if we need to
if (descriptor_requests[dest].size() >
distribution.block_size(dest, n)) {
std::sort(descriptor_requests[dest].begin(),
descriptor_requests[dest].end());
descriptor_requests[dest].erase(
std::unique(descriptor_requests[dest].begin(),
descriptor_requests[dest].end()),
descriptor_requests[dest].end());
}
}
// Save the edge for later
delayed_edges.push_back(delayed_edge_t(source, first->second));
}
++first;
}
// Compact descriptor requests
for (process_id_type dest = 0; dest < num_processes(pg); ++dest) {
std::sort(descriptor_requests[dest].begin(),
descriptor_requests[dest].end());
descriptor_requests[dest].erase(
std::unique(descriptor_requests[dest].begin(),
descriptor_requests[dest].end()),
descriptor_requests[dest].end());
}
// Send out all of the descriptor requests
std::vector<std::vector<vertex_number_t> > in_descriptor_requests;
in_descriptor_requests.resize(num_processes(pg));
inplace_all_to_all(pg, descriptor_requests, in_descriptor_requests);
// Reply to all of the descriptor requests
std::vector<std::vector<local_vertex_descriptor> >
descriptor_responses;
descriptor_responses.resize(num_processes(pg));
for (process_id_type dest = 0; dest < num_processes(pg); ++dest) {
for (std::size_t i = 0; i < in_descriptor_requests[dest].size(); ++i) {
local_vertex_descriptor v =
index_to_vertex[in_descriptor_requests[dest][i]];
descriptor_responses[dest].push_back(v);
}
in_descriptor_requests[dest].clear();
}
in_descriptor_requests.clear();
inplace_all_to_all(pg, descriptor_responses);
// Add the queued edges
for(typename std::vector<delayed_edge_t>::iterator i
= delayed_edges.begin(); i != delayed_edges.end(); ++i) {
process_id_type dest = distribution(i->second);
local_vertex_descriptor tgt_local;
if (dest == id) {
tgt_local = index_to_vertex[distribution.local(i->second)];
} else {
std::vector<vertex_number_t>& requests = descriptor_requests[dest];
typename std::vector<vertex_number_t>::iterator pos =
std::lower_bound(requests.begin(), requests.end(),
distribution.local(i->second));
tgt_local = descriptor_responses[dest][pos - requests.begin()];
}
add_edge(i->first, vertex_descriptor(dest, tgt_local), *this);
}
synchronize(process_group_);
}
} // end namespace boost
#endif // BOOST_GRAPH_DISTRIBUTED_ADJLIST_INITIALIZE_HPP

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// Copyright (C) 2005-2006 The Trustees of Indiana University.
// Use, modification and distribution is subject to the Boost Software
// License, Version 1.0. (See accompanying file LICENSE_1_0.txt or copy at
// http://www.boost.org/LICENSE_1_0.txt)
// Authors: Douglas Gregor
// Andrew Lumsdaine
//
// Implements redistribution of vertices for a distributed adjacency
// list. This file should not be included by users. It will be
// included by the distributed adjacency list header.
//
#ifndef BOOST_GRAPH_USE_MPI
#error "Parallel BGL files should not be included unless <boost/graph/use_mpi.hpp> has been included"
#endif
#include <boost/pending/container_traits.hpp>
namespace boost { namespace detail { namespace parallel {
/* This structure contains a (vertex or edge) descriptor that is being
moved from one processor to another. It contains the properties for
that descriptor (if any).
*/
template<typename Descriptor, typename DescriptorProperty>
struct redistributed_descriptor : maybe_store_property<DescriptorProperty>
{
typedef maybe_store_property<DescriptorProperty> inherited;
redistributed_descriptor() { }
redistributed_descriptor(const Descriptor& v, const DescriptorProperty& p)
: inherited(p), descriptor(v) { }
Descriptor descriptor;
private:
friend class boost::serialization::access;
template<typename Archiver>
void serialize(Archiver& ar, unsigned int /*version*/)
{
ar & boost::serialization::base_object<inherited>(*this)
& unsafe_serialize(descriptor);
}
};
/* Predicate that returns true if the target has migrated. */
template<typename VertexProcessorMap, typename Graph>
struct target_migrated_t
{
typedef typename graph_traits<Graph>::vertex_descriptor Vertex;
typedef typename graph_traits<Graph>::edge_descriptor Edge;
target_migrated_t(VertexProcessorMap vertex_to_processor, const Graph& g)
: vertex_to_processor(vertex_to_processor), g(g) { }
bool operator()(Edge e) const
{
typedef global_descriptor<Vertex> DVertex;
processor_id_type owner = get(edge_target_processor_id, g, e);
return get(vertex_to_processor, DVertex(owner, target(e, g))) != owner;
}
private:
VertexProcessorMap vertex_to_processor;
const Graph& g;
};
template<typename VertexProcessorMap, typename Graph>
inline target_migrated_t<VertexProcessorMap, Graph>
target_migrated(VertexProcessorMap vertex_to_processor, const Graph& g)
{ return target_migrated_t<VertexProcessorMap, Graph>(vertex_to_processor, g); }
/* Predicate that returns true if the source of an in-edge has migrated. */
template<typename VertexProcessorMap, typename Graph>
struct source_migrated_t
{
typedef typename graph_traits<Graph>::vertex_descriptor Vertex;
typedef typename graph_traits<Graph>::edge_descriptor Edge;
source_migrated_t(VertexProcessorMap vertex_to_processor, const Graph& g)
: vertex_to_processor(vertex_to_processor), g(g) { }
bool operator()(stored_in_edge<Edge> e) const
{
return get(vertex_to_processor, DVertex(e.source_processor, source(e.e, g)))
!= e.source_processor;
}
private:
VertexProcessorMap vertex_to_processor;
const Graph& g;
};
template<typename VertexProcessorMap, typename Graph>
inline source_migrated_t<VertexProcessorMap, Graph>
source_migrated(VertexProcessorMap vertex_to_processor, const Graph& g)
{ return source_migrated_t<VertexProcessorMap, Graph>(vertex_to_processor, g); }
/* Predicate that returns true if the target has migrated. */
template<typename VertexProcessorMap, typename Graph>
struct source_or_target_migrated_t
{
typedef typename graph_traits<Graph>::edge_descriptor Edge;
source_or_target_migrated_t(VertexProcessorMap vertex_to_processor,
const Graph& g)
: vertex_to_processor(vertex_to_processor), g(g) { }
bool operator()(Edge e) const
{
return get(vertex_to_processor, source(e, g)) != source(e, g).owner
|| get(vertex_to_processor, target(e, g)) != target(e, g).owner;
}
private:
VertexProcessorMap vertex_to_processor;
const Graph& g;
};
template<typename VertexProcessorMap, typename Graph>
inline source_or_target_migrated_t<VertexProcessorMap, Graph>
source_or_target_migrated(VertexProcessorMap vertex_to_processor,
const Graph& g)
{
typedef source_or_target_migrated_t<VertexProcessorMap, Graph> result_type;
return result_type(vertex_to_processor, g);
}
} } // end of namespace detail::parallel
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
template<typename VertexProcessorMap>
void
PBGL_DISTRIB_ADJLIST_TYPE
::request_in_neighbors(vertex_descriptor v,
VertexProcessorMap vertex_to_processor,
bidirectionalS)
{
BGL_FORALL_INEDGES_T(v, e, *this, graph_type)
request(vertex_to_processor, source(e, *this));
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
template<typename VertexProcessorMap>
void
PBGL_DISTRIB_ADJLIST_TYPE
::remove_migrated_in_edges(vertex_descriptor v,
VertexProcessorMap vertex_to_processor,
bidirectionalS)
{
graph_detail::erase_if(get(vertex_in_edges, base())[v.local],
source_migrated(vertex_to_processor, base()));
}
template<PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
template<typename VertexProcessorMap>
void
PBGL_DISTRIB_ADJLIST_TYPE
::redistribute(VertexProcessorMap vertex_to_processor)
{
using boost::parallel::inplace_all_to_all;
// When we have stable descriptors, we only move those descriptors
// that actually need to be moved. Otherwise, we essentially have to
// regenerate the entire graph.
const bool has_stable_descriptors =
is_same<typename config_type::vertex_list_selector, listS>::value
|| is_same<typename config_type::vertex_list_selector, setS>::value
|| is_same<typename config_type::vertex_list_selector, multisetS>::value;
typedef detail::parallel::redistributed_descriptor<vertex_descriptor,
vertex_property_type>
redistributed_vertex;
typedef detail::parallel::redistributed_descriptor<edge_descriptor,
edge_property_type>
redistributed_edge;
vertex_iterator vi, vi_end;
edge_iterator ei, ei_end;
process_group_type pg = process_group();
// Initial synchronization makes sure that we have all of our ducks
// in a row. We don't want any outstanding add/remove messages
// coming in mid-redistribution!
synchronize(process_group_);
// We cannot cope with eviction of ghost cells
vertex_to_processor.set_max_ghost_cells(0);
process_id_type p = num_processes(pg);
// Send vertices and edges to the processor where they will
// actually reside. This requires O(|V| + |E|) communication
std::vector<std::vector<redistributed_vertex> > redistributed_vertices(p);
std::vector<std::vector<redistributed_edge> > redistributed_edges(p);
// Build the sets of relocated vertices for each process and then do
// an all-to-all transfer.
for (boost::tie(vi, vi_end) = vertices(*this); vi != vi_end; ++vi) {
if (!has_stable_descriptors
|| get(vertex_to_processor, *vi) != vi->owner) {
redistributed_vertices[get(vertex_to_processor, *vi)]
.push_back(redistributed_vertex(*vi, get(vertex_all_t(), base(),
vi->local)));
}
// When our descriptors are stable, we need to determine which
// adjacent descriptors are stable to determine which edges will
// be removed.
if (has_stable_descriptors) {
BGL_FORALL_OUTEDGES_T(*vi, e, *this, graph_type)
request(vertex_to_processor, target(e, *this));
request_in_neighbors(*vi, vertex_to_processor, directed_selector());
}
}
inplace_all_to_all(pg, redistributed_vertices);
// If we have stable descriptors, we need to know where our neighbor
// vertices are moving.
if (has_stable_descriptors)
synchronize(vertex_to_processor);
// Build the sets of relocated edges for each process and then do
// an all-to-all transfer.
for (boost::tie(ei, ei_end) = edges(*this); ei != ei_end; ++ei) {
vertex_descriptor src = source(*ei, *this);
vertex_descriptor tgt = target(*ei, *this);
if (!has_stable_descriptors
|| get(vertex_to_processor, src) != src.owner
|| get(vertex_to_processor, tgt) != tgt.owner)
redistributed_edges[get(vertex_to_processor, source(*ei, *this))]
.push_back(redistributed_edge(*ei, split_edge_property(get(edge_all_t(), base(),
ei->local))));
}
inplace_all_to_all(pg, redistributed_edges);
// A mapping from old vertex descriptors to new vertex
// descriptors. This is an STL map partly because I'm too lazy to
// build a real property map (which is hard in the general case) but
// also because it won't try to look in the graph itself, because
// the keys are all vertex descriptors that have been invalidated.
std::map<vertex_descriptor, vertex_descriptor> old_to_new_vertex_map;
if (has_stable_descriptors) {
// Clear out all vertices and edges that will have moved. There
// are several stages to this.
// First, eliminate all outgoing edges from the (local) vertices
// that have been moved or whose targets have been moved.
BGL_FORALL_VERTICES_T(v, *this, graph_type) {
if (get(vertex_to_processor, v) != v.owner) {
clear_out_edges(v.local, base());
clear_in_edges_local(v, directed_selector());
} else {
remove_out_edge_if(v.local,
target_migrated(vertex_to_processor, base()),
base());
remove_migrated_in_edges(v, vertex_to_processor, directed_selector());
}
}
// Next, eliminate locally-stored edges that have migrated (for
// undirected graphs).
graph_detail::erase_if(local_edges_,
source_or_target_migrated(vertex_to_processor, *this));
// Eliminate vertices that have migrated
for (boost::tie(vi, vi_end) = vertices(*this); vi != vi_end; /* in loop */) {
if (get(vertex_to_processor, *vi) != vi->owner)
remove_vertex((*vi++).local, base());
else {
// Add the identity relation for vertices that have not migrated
old_to_new_vertex_map[*vi] = *vi;
++vi;
}
}
} else {
// Clear out the local graph: the entire graph is in transit
clear();
}
// Add the new vertices to the graph. When we do so, update the old
// -> new vertex mapping both locally and for the owner of the "old"
// vertex.
{
typedef std::pair<vertex_descriptor, vertex_descriptor> mapping_pair;
std::vector<std::vector<mapping_pair> > mappings(p);
for (process_id_type src = 0; src < p; ++src) {
for (typename std::vector<redistributed_vertex>::iterator vi =
redistributed_vertices[src].begin();
vi != redistributed_vertices[src].end(); ++vi) {
vertex_descriptor new_vertex =
add_vertex(vi->get_property(), *this);
old_to_new_vertex_map[vi->descriptor] = new_vertex;
mappings[vi->descriptor.owner].push_back(mapping_pair(vi->descriptor,
new_vertex));
}
redistributed_vertices[src].clear();
}
inplace_all_to_all(pg, mappings);
// Add the mappings we were sent into the old->new map.
for (process_id_type src = 0; src < p; ++src)
old_to_new_vertex_map.insert(mappings[src].begin(), mappings[src].end());
}
// Get old->new vertex mappings for all of the vertices we need to
// know about.
// TBD: An optimization here might involve sending the
// request-response pairs without an explicit request step (for
// bidirectional and undirected graphs). However, it may not matter
// all that much given the cost of redistribution.
{
std::vector<std::vector<vertex_descriptor> > vertex_map_requests(p);
std::vector<std::vector<vertex_descriptor> > vertex_map_responses(p);
// We need to know about all of the vertices incident on edges
// that have been relocated to this processor. Tell each processor
// what each other processor needs to know.
for (process_id_type src = 0; src < p; ++src)
for (typename std::vector<redistributed_edge>::iterator ei =
redistributed_edges[src].begin();
ei != redistributed_edges[src].end(); ++ei) {
vertex_descriptor need_vertex = target(ei->descriptor, *this);
if (old_to_new_vertex_map.find(need_vertex)
== old_to_new_vertex_map.end())
{
old_to_new_vertex_map[need_vertex] = need_vertex;
vertex_map_requests[need_vertex.owner].push_back(need_vertex);
}
}
inplace_all_to_all(pg,
vertex_map_requests,
vertex_map_responses);
// Process the requests made for vertices we own. Then perform yet
// another all-to-all swap. This one matches the requests we've
// made to the responses we were given.
for (process_id_type src = 0; src < p; ++src)
for (typename std::vector<vertex_descriptor>::iterator vi =
vertex_map_responses[src].begin();
vi != vertex_map_responses[src].end(); ++vi)
*vi = old_to_new_vertex_map[*vi];
inplace_all_to_all(pg, vertex_map_responses);
// Matching the requests to the responses, update the old->new
// vertex map for all of the vertices we will need to know.
for (process_id_type src = 0; src < p; ++src) {
typedef typename std::vector<vertex_descriptor>::size_type size_type;
for (size_type i = 0; i < vertex_map_requests[src].size(); ++i) {
old_to_new_vertex_map[vertex_map_requests[src][i]] =
vertex_map_responses[src][i];
}
}
}
// Add edges to the graph by mapping the source and target.
for (process_id_type src = 0; src < p; ++src) {
for (typename std::vector<redistributed_edge>::iterator ei =
redistributed_edges[src].begin();
ei != redistributed_edges[src].end(); ++ei) {
add_edge(old_to_new_vertex_map[source(ei->descriptor, *this)],
old_to_new_vertex_map[target(ei->descriptor, *this)],
ei->get_property(),
*this);
}
redistributed_edges[src].clear();
}
// Be sure that edge-addition messages are received now, completing
// the graph.
synchronize(process_group_);
this->distribution().clear();
detail::parallel::maybe_initialize_vertex_indices(vertices(base()),
get(vertex_index, base()));
}
} // end namespace boost

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@@ -0,0 +1,988 @@
// Copyright Daniel Wallin 2007. Use, modification and distribution is
// subject to the Boost Software License, Version 1.0. (See accompanying
// file LICENSE_1_0.txt or copy at http://www.boost.org/LICENSE_1_0.txt)
#ifndef BOOST_GRAPH_DISTRIBUTED_ADJLIST_SERIALIZATION_070925_HPP
#define BOOST_GRAPH_DISTRIBUTED_ADJLIST_SERIALIZATION_070925_HPP
#ifndef BOOST_GRAPH_USE_MPI
#error "Parallel BGL files should not be included unless <boost/graph/use_mpi.hpp> has been included"
#endif
# include <boost/assert.hpp>
# include <boost/lexical_cast.hpp>
# include <boost/foreach.hpp>
# include <boost/filesystem/path.hpp>
# include <boost/filesystem/operations.hpp>
# include <cctype>
# include <fstream>
namespace boost {
namespace detail { namespace parallel
{
// Wraps a local descriptor, making it serializable.
template <class Local>
struct serializable_local_descriptor
{
serializable_local_descriptor()
{}
serializable_local_descriptor(Local local)
: local(local)
{}
operator Local const&() const
{
return local;
}
bool operator==(serializable_local_descriptor const& other) const
{
return local == other.local;
}
bool operator<(serializable_local_descriptor const& other) const
{
return local < other.local;
}
template <class Archive>
void serialize(Archive& ar, const unsigned int /*version*/)
{
ar & unsafe_serialize(local);
}
Local local;
};
template <class Vertex, class Properties>
struct pending_edge
{
pending_edge(
Vertex source, Vertex target
, Properties properties, void* property_ptr
)
: source(source)
, target(target)
, properties(properties)
, property_ptr(property_ptr)
{}
Vertex source;
Vertex target;
Properties properties;
void* property_ptr;
};
inline bool is_digit(char c)
{
return std::isdigit(c) != 0;
}
inline std::vector<int>
available_process_files(std::string const& filename)
{
if (!filesystem::exists(filename))
return std::vector<int>();
std::vector<int> result;
for (filesystem::directory_iterator i(filename), end; i != end; ++i)
{
if (!filesystem::is_regular(*i))
boost::throw_exception(std::runtime_error("directory contains non-regular entries"));
std::string process_name = i->path().filename().string();
for (std::string::size_type i = 0; i < process_name.size(); ++i)
if (!is_digit(process_name[i]))
boost::throw_exception(std::runtime_error("directory contains files with invalid names"));
result.push_back(boost::lexical_cast<int>(process_name));
}
return result;
}
template <class Archive, class Tag, class T, class Base>
void maybe_load_properties(
Archive& ar, char const* name, property<Tag, T, Base>& properties)
{
ar >> serialization::make_nvp(name, get_property_value(properties, Tag()));
maybe_load_properties(ar, name, static_cast<Base&>(properties));
}
template <class Archive>
void maybe_load_properties(
Archive&, char const*, no_property&)
{}
template <class Archive, typename Bundle>
void maybe_load_properties(
Archive& ar, char const* name, Bundle& bundle)
{
ar >> serialization::make_nvp(name, bundle);
no_property prop;
maybe_load_properties(ar, name, prop);
}
template <class Graph, class Archive, class VertexListS>
struct graph_loader
{
typedef typename Graph::vertex_descriptor vertex_descriptor;
typedef typename Graph::local_vertex_descriptor local_vertex_descriptor;
typedef typename Graph::vertex_property_type vertex_property_type;
typedef typename Graph::edge_descriptor edge_descriptor;
typedef typename Graph::local_edge_descriptor local_edge_descriptor;
typedef typename Graph::edge_property_type edge_property_type;
typedef typename Graph::process_group_type process_group_type;
typedef typename process_group_type::process_id_type process_id_type;
typedef typename Graph::directed_selector directed_selector;
typedef typename mpl::if_<
is_same<VertexListS, defaultS>, vecS, VertexListS
>::type vertex_list_selector;
typedef pending_edge<vertex_descriptor, edge_property_type>
pending_edge_type;
typedef serializable_local_descriptor<local_vertex_descriptor>
serializable_vertex_descriptor;
graph_loader(Graph& g, Archive& ar)
: m_g(g)
, m_ar(ar)
, m_pg(g.process_group())
, m_requested_vertices(num_processes(m_pg))
, m_remote_vertices(num_processes(m_pg))
, m_property_ptrs(num_processes(m_pg))
{
g.clear();
load_prefix();
load_vertices();
load_edges();
ar >> make_nvp("distribution", m_g.distribution());
}
private:
struct pending_in_edge
{
pending_in_edge(
vertex_descriptor u, vertex_descriptor v, void* property_ptr
)
: u(u)
, v(v)
, property_ptr(property_ptr)
{}
vertex_descriptor u;
vertex_descriptor v;
void* property_ptr;
};
bool is_root() const
{
return process_id(m_pg) == 0;
}
template <class T>
serialization::nvp<T> const make_nvp(char const* name, T& value) const
{
return serialization::nvp<T>(name, value);
}
void load_prefix();
void load_vertices();
template <class Anything>
void maybe_load_and_store_local_vertex(Anything);
void maybe_load_and_store_local_vertex(vecS);
void load_edges();
void load_in_edges(bidirectionalS);
void load_in_edges(directedS);
void add_pending_in_edge(
vertex_descriptor u, vertex_descriptor v, void* property_ptr, vecS);
template <class Anything>
void add_pending_in_edge(
vertex_descriptor u, vertex_descriptor v, void* property_ptr, Anything);
template <class Anything>
void add_edge(
vertex_descriptor u, vertex_descriptor v
, edge_property_type const& property, void* property_ptr, Anything);
void add_edge(
vertex_descriptor u, vertex_descriptor v
, edge_property_type const& property, void* property_ptr, vecS);
void add_remote_vertex_request(
vertex_descriptor u, vertex_descriptor v, directedS);
void add_remote_vertex_request(
vertex_descriptor u, vertex_descriptor v, bidirectionalS);
void add_in_edge(
edge_descriptor const&, void*, directedS);
void add_in_edge(
edge_descriptor const& edge, void* old_property_ptr, bidirectionalS);
void resolve_remote_vertices(directedS);
void resolve_remote_vertices(bidirectionalS);
vertex_descriptor resolve_remote_vertex(vertex_descriptor u) const;
vertex_descriptor resolve_remote_vertex(vertex_descriptor u, vecS) const;
template <class Anything>
vertex_descriptor resolve_remote_vertex(vertex_descriptor u, Anything) const;
void resolve_property_ptrs();
void commit_pending_edges(vecS);
template <class Anything>
void commit_pending_edges(Anything);
void commit_pending_in_edges(directedS);
void commit_pending_in_edges(bidirectionalS);
void* maybe_load_property_ptr(directedS) { return 0; }
void* maybe_load_property_ptr(bidirectionalS);
Graph& m_g;
Archive& m_ar;
process_group_type m_pg;
std::vector<process_id_type> m_id_mapping;
// Maps local vertices as loaded from the archive to
// the ones actually added to the graph. Only used
// when !vecS.
std::map<local_vertex_descriptor, local_vertex_descriptor> m_local_vertices;
// This is the list of remote vertex descriptors that we
// are going to receive from other processes. This is
// kept sorted so that we can determine the position of
// the matching vertex descriptor in m_remote_vertices.
std::vector<std::vector<serializable_vertex_descriptor> > m_requested_vertices;
// This is the list of remote vertex descriptors that
// we send and receive from other processes.
std::vector<std::vector<serializable_vertex_descriptor> > m_remote_vertices;
// ...
std::vector<pending_edge_type> m_pending_edges;
// The pending in-edges that will be added in the commit step, after
// the remote vertex descriptors has been resolved. Only used
// when bidirectionalS and !vecS.
std::vector<pending_in_edge> m_pending_in_edges;
std::vector<std::vector<unsafe_pair<void*,void*> > > m_property_ptrs;
};
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::load_prefix()
{
typename process_group_type::process_size_type num_processes_;
m_ar >> make_nvp("num_processes", num_processes_);
if (num_processes_ != num_processes(m_pg))
boost::throw_exception(std::runtime_error("number of processes mismatch"));
process_id_type old_id;
m_ar >> make_nvp("id", old_id);
std::vector<typename Graph::distribution_type::size_type> mapping;
m_ar >> make_nvp("mapping", mapping);
// Fetch all the old id's from the other processes.
std::vector<process_id_type> old_ids;
all_gather(m_pg, &old_id, &old_id+1, old_ids);
m_id_mapping.resize(num_processes(m_pg), -1);
for (process_id_type i = 0; i < num_processes(m_pg); ++i)
{
# ifdef PBGL_SERIALIZE_DEBUG
if (is_root())
std::cout << i << " used to be " << old_ids[i] << "\n";
# endif
BOOST_ASSERT(m_id_mapping[old_ids[i]] == -1);
m_id_mapping[old_ids[i]] = i;
}
std::vector<typename Graph::distribution_type::size_type> new_mapping(
mapping.size());
for (int i = 0; i < num_processes(m_pg); ++i)
{
new_mapping[mapping[old_ids[i]]] = i;
}
m_g.distribution().assign_mapping(
new_mapping.begin(), new_mapping.end());
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::load_vertices()
{
int V;
m_ar >> BOOST_SERIALIZATION_NVP(V);
# ifdef PBGL_SERIALIZE_DEBUG
if (is_root())
std::cout << "Loading vertices\n";
# endif
for (int i = 0; i < V; ++i)
{
maybe_load_and_store_local_vertex(vertex_list_selector());
}
}
template <class Graph, class Archive, class VertexListS>
template <class Anything>
void graph_loader<Graph, Archive, VertexListS>::maybe_load_and_store_local_vertex(Anything)
{
// Load the original vertex descriptor
local_vertex_descriptor local;
m_ar >> make_nvp("local", unsafe_serialize(local));
// Load the properties
vertex_property_type property;
detail::parallel::maybe_load_properties(m_ar, "vertex_property",
property);
// Add the vertex
vertex_descriptor v(process_id(m_pg), add_vertex(property, m_g.base()));
if (m_g.on_add_vertex)
m_g.on_add_vertex(v, m_g);
// Create the mapping from the "old" local descriptor to the new
// local descriptor.
m_local_vertices[local] = v.local;
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::maybe_load_and_store_local_vertex(vecS)
{
// Load the properties
vertex_property_type property;
detail::parallel::maybe_load_properties(m_ar, "vertex_property",
property);
// Add the vertex
vertex_descriptor v(process_id(m_pg),
add_vertex(m_g.build_vertex_property(property),
m_g.base()));
if (m_g.on_add_vertex)
m_g.on_add_vertex(v, m_g);
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::load_edges()
{
int E;
m_ar >> BOOST_SERIALIZATION_NVP(E);
# ifdef PBGL_SERIALIZE_DEBUG
if (is_root())
std::cout << "Loading edges\n";
# endif
for (int i = 0; i < E; ++i)
{
local_vertex_descriptor local_src;
process_id_type target_owner;
local_vertex_descriptor local_tgt;
m_ar >> make_nvp("source", unsafe_serialize(local_src));
m_ar >> make_nvp("target_owner", target_owner);
m_ar >> make_nvp("target", unsafe_serialize(local_tgt));
process_id_type new_src_owner = process_id(m_pg);
process_id_type new_tgt_owner = m_id_mapping[target_owner];
vertex_descriptor source(new_src_owner, local_src);
vertex_descriptor target(new_tgt_owner, local_tgt);
edge_property_type properties;
detail::parallel::maybe_load_properties(m_ar, "edge_property", properties);
void* property_ptr = maybe_load_property_ptr(directed_selector());
add_edge(source, target, properties, property_ptr, vertex_list_selector());
}
load_in_edges(directed_selector());
commit_pending_edges(vertex_list_selector());
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::load_in_edges(bidirectionalS)
{
std::size_t I;
m_ar >> BOOST_SERIALIZATION_NVP(I);
# ifdef PBGL_SERIALIZE_DEBUG
if (is_root())
std::cout << "Loading in-edges\n";
# endif
for (int i = 0; i < I; ++i)
{
process_id_type src_owner;
local_vertex_descriptor local_src;
local_vertex_descriptor local_target;
void* property_ptr;
m_ar >> make_nvp("src_owner", src_owner);
m_ar >> make_nvp("source", unsafe_serialize(local_src));
m_ar >> make_nvp("target", unsafe_serialize(local_target));
m_ar >> make_nvp("property_ptr", unsafe_serialize(property_ptr));
src_owner = m_id_mapping[src_owner];
vertex_descriptor u(src_owner, local_src);
vertex_descriptor v(process_id(m_pg), local_target);
add_pending_in_edge(u, v, property_ptr, vertex_list_selector());
}
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::load_in_edges(directedS)
{}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::add_pending_in_edge(
vertex_descriptor u, vertex_descriptor v, void* property_ptr, vecS)
{
m_pending_in_edges.push_back(pending_in_edge(u,v,property_ptr));
}
template <class Graph, class Archive, class VertexListS>
template <class Anything>
void graph_loader<Graph, Archive, VertexListS>::add_pending_in_edge(
vertex_descriptor u, vertex_descriptor v, void* property_ptr, Anything)
{
// u and v represent the out-edge here, meaning v is local
// to us, and u is always remote.
m_pending_in_edges.push_back(pending_in_edge(u,v,property_ptr));
add_remote_vertex_request(v, u, bidirectionalS());
}
template <class Graph, class Archive, class VertexListS>
template <class Anything>
void graph_loader<Graph, Archive, VertexListS>::add_edge(
vertex_descriptor u, vertex_descriptor v
, edge_property_type const& property, void* property_ptr, Anything)
{
m_pending_edges.push_back(pending_edge_type(u, v, property, property_ptr));
add_remote_vertex_request(u, v, directed_selector());
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::add_remote_vertex_request(
vertex_descriptor u, vertex_descriptor v, directedS)
{
// We have to request the remote vertex.
m_requested_vertices[owner(v)].push_back(local(v));
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::add_remote_vertex_request(
vertex_descriptor u, vertex_descriptor v, bidirectionalS)
{
// If the edge spans to another process, we know
// that that process has a matching in-edge, so
// we can just send our vertex. No requests
// necessary.
if (owner(v) != m_g.processor())
{
m_remote_vertices[owner(v)].push_back(local(u));
m_requested_vertices[owner(v)].push_back(local(v));
}
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::add_edge(
vertex_descriptor u, vertex_descriptor v
, edge_property_type const& property, void* property_ptr, vecS)
{
std::pair<local_edge_descriptor, bool> inserted =
detail::parallel::add_local_edge(
local(u), local(v)
, m_g.build_edge_property(property), m_g.base());
BOOST_ASSERT(inserted.second);
put(edge_target_processor_id, m_g.base(), inserted.first, owner(v));
edge_descriptor e(owner(u), owner(v), true, inserted.first);
if (inserted.second && m_g.on_add_edge)
m_g.on_add_edge(e, m_g);
add_in_edge(e, property_ptr, directed_selector());
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::add_in_edge(
edge_descriptor const&, void*, directedS)
{}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::add_in_edge(
edge_descriptor const& edge, void* old_property_ptr, bidirectionalS)
{
if (owner(target(edge, m_g)) == m_g.processor())
{
detail::parallel::stored_in_edge<local_edge_descriptor>
e(m_g.processor(), local(edge));
boost::graph_detail::push(get(
vertex_in_edges, m_g.base())[local(target(edge, m_g))], e);
}
else
{
// We send the (old,new) property pointer pair to
// the remote process. This could be optimized to
// only send the new one -- the ordering can be
// made implicit because the old pointer value is
// stored on the remote process.
//
// Doing that is a little bit more complicated, but
// in case it turns out it's important we can do it.
void* property_ptr = local(edge).get_property();
m_property_ptrs[owner(target(edge, m_g))].push_back(
unsafe_pair<void*,void*>(old_property_ptr, property_ptr));
}
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::resolve_property_ptrs()
{
# ifdef PBGL_SERIALIZE_DEBUG
if (is_root())
std::cout << "Resolving property pointers\n";
# endif
for (int i = 0; i < num_processes(m_pg); ++i)
{
std::sort(
m_property_ptrs[i].begin(), m_property_ptrs[i].end());
}
boost::parallel::inplace_all_to_all(m_pg, m_property_ptrs);
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertices(directedS)
{
for (int i = 0; i < num_processes(m_pg); ++i)
{
std::sort(m_requested_vertices[i].begin(), m_requested_vertices[i].end());
}
boost::parallel::inplace_all_to_all(
m_pg, m_requested_vertices, m_remote_vertices);
for (int i = 0; i < num_processes(m_pg); ++i)
{
BOOST_FOREACH(serializable_vertex_descriptor& u, m_remote_vertices[i])
{
u = m_local_vertices[u];
}
}
boost::parallel::inplace_all_to_all(m_pg, m_remote_vertices);
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertices(bidirectionalS)
{
# ifdef PBGL_SERIALIZE_DEBUG
if (is_root())
std::cout << "Resolving remote vertices\n";
# endif
for (int i = 0; i < num_processes(m_pg); ++i)
{
std::sort(m_requested_vertices[i].begin(), m_requested_vertices[i].end());
std::sort(m_remote_vertices[i].begin(), m_remote_vertices[i].end());
BOOST_FOREACH(serializable_vertex_descriptor& u, m_remote_vertices[i])
{
u = m_local_vertices[u];
}
}
boost::parallel::inplace_all_to_all(m_pg, m_remote_vertices);
for (int i = 0; i < num_processes(m_pg); ++i)
BOOST_ASSERT(m_remote_vertices[i].size() == m_requested_vertices[i].size());
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::commit_pending_edges(vecS)
{
commit_pending_in_edges(directed_selector());
}
template <class Graph, class Archive, class VertexListS>
template <class Anything>
void graph_loader<Graph, Archive, VertexListS>::commit_pending_edges(Anything)
{
resolve_remote_vertices(directed_selector());
BOOST_FOREACH(pending_edge_type const& e, m_pending_edges)
{
vertex_descriptor u = resolve_remote_vertex(e.source);
vertex_descriptor v = resolve_remote_vertex(e.target);
add_edge(u, v, e.properties, e.property_ptr, vecS());
}
commit_pending_in_edges(directed_selector());
}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::commit_pending_in_edges(directedS)
{}
template <class Graph, class Archive, class VertexListS>
void graph_loader<Graph, Archive, VertexListS>::commit_pending_in_edges(bidirectionalS)
{
resolve_property_ptrs();
BOOST_FOREACH(pending_in_edge const& e, m_pending_in_edges)
{
vertex_descriptor u = resolve_remote_vertex(e.u, vertex_list_selector());
vertex_descriptor v = resolve_remote_vertex(e.v, vertex_list_selector());
typedef detail::parallel::stored_in_edge<local_edge_descriptor> stored_edge;
std::vector<unsafe_pair<void*,void*> >::iterator i = std::lower_bound(
m_property_ptrs[owner(u)].begin()
, m_property_ptrs[owner(u)].end()
, unsafe_pair<void*,void*>(e.property_ptr, 0)
);
if (i == m_property_ptrs[owner(u)].end()
|| i->first != e.property_ptr)
{
BOOST_ASSERT(false);
}
local_edge_descriptor local_edge(local(u), local(v), i->second);
stored_edge edge(owner(u), local_edge);
boost::graph_detail::push(
get(vertex_in_edges, m_g.base())[local(v)], edge);
}
}
template <class Graph, class Archive, class VertexListS>
typename graph_loader<Graph, Archive, VertexListS>::vertex_descriptor
graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertex(
vertex_descriptor u) const
{
if (owner(u) == process_id(m_pg))
{
return vertex_descriptor(
process_id(m_pg), m_local_vertices.find(local(u))->second);
}
typename std::vector<serializable_vertex_descriptor>::const_iterator
i = std::lower_bound(
m_requested_vertices[owner(u)].begin()
, m_requested_vertices[owner(u)].end()
, serializable_vertex_descriptor(local(u))
);
if (i == m_requested_vertices[owner(u)].end()
|| *i != local(u))
{
BOOST_ASSERT(false);
}
local_vertex_descriptor local =
m_remote_vertices[owner(u)][m_requested_vertices[owner(u)].end() - i];
return vertex_descriptor(owner(u), local);
}
template <class Graph, class Archive, class VertexListS>
typename graph_loader<Graph, Archive, VertexListS>::vertex_descriptor
graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertex(
vertex_descriptor u, vecS) const
{
return u;
}
template <class Graph, class Archive, class VertexListS>
template <class Anything>
typename graph_loader<Graph, Archive, VertexListS>::vertex_descriptor
graph_loader<Graph, Archive, VertexListS>::resolve_remote_vertex(
vertex_descriptor u, Anything) const
{
return resolve_remote_vertex(u);
}
template <class Graph, class Archive, class VertexListS>
void*
graph_loader<Graph, Archive, VertexListS>::maybe_load_property_ptr(bidirectionalS)
{
void* ptr;
m_ar >> make_nvp("property_ptr", unsafe_serialize(ptr));
return ptr;
}
template <class Archive, class D>
void maybe_save_local_descriptor(Archive& ar, D const&, vecS)
{}
template <class Archive, class D, class NotVecS>
void maybe_save_local_descriptor(Archive& ar, D const& d, NotVecS)
{
ar << serialization::make_nvp(
"local", unsafe_serialize(const_cast<D&>(d)));
}
template <class Archive>
void maybe_save_properties(
Archive&, char const*, no_property const&)
{}
template <class Archive, class Tag, class T, class Base>
void maybe_save_properties(
Archive& ar, char const* name, property<Tag, T, Base> const& properties)
{
ar & serialization::make_nvp(name, get_property_value(properties, Tag()));
maybe_save_properties(ar, name, static_cast<Base const&>(properties));
}
template <class Archive, class Graph>
void save_in_edges(Archive& ar, Graph const& g, directedS)
{}
// We need to save the edges in the base edge
// list, and the in_edges that are stored in the
// vertex_in_edges vertex property.
template <class Archive, class Graph>
void save_in_edges(Archive& ar, Graph const& g, bidirectionalS)
{
typedef typename Graph::process_group_type
process_group_type;
typedef typename process_group_type::process_id_type
process_id_type;
typedef typename graph_traits<
Graph>::vertex_descriptor vertex_descriptor;
typedef typename vertex_descriptor::local_descriptor_type
local_vertex_descriptor;
typedef typename graph_traits<
Graph>::edge_descriptor edge_descriptor;
process_id_type id = g.processor();
std::vector<edge_descriptor> saved_in_edges;
BGL_FORALL_VERTICES_T(v, g, Graph)
{
BOOST_FOREACH(edge_descriptor const& e, in_edges(v, g))
{
// Only save the in_edges that isn't owned by this process.
if (owner(e) == id)
continue;
saved_in_edges.push_back(e);
}
}
std::size_t I = saved_in_edges.size();
ar << BOOST_SERIALIZATION_NVP(I);
BOOST_FOREACH(edge_descriptor const& e, saved_in_edges)
{
process_id_type src_owner = owner(source(e,g));
local_vertex_descriptor local_src = local(source(e,g));
local_vertex_descriptor local_target = local(target(e,g));
void* property_ptr = local(e).get_property();
using serialization::make_nvp;
ar << make_nvp("src_owner", src_owner);
ar << make_nvp("source", unsafe_serialize(local_src));
ar << make_nvp("target", unsafe_serialize(local_target));
ar << make_nvp("property_ptr", unsafe_serialize(property_ptr));
}
}
template <class Archive, class Edge>
void maybe_save_property_ptr(Archive&, Edge const&, directedS)
{}
template <class Archive, class Edge>
void maybe_save_property_ptr(Archive& ar, Edge const& e, bidirectionalS)
{
void* ptr = local(e).get_property();
ar << serialization::make_nvp("property_ptr", unsafe_serialize(ptr));
}
template <class Archive, class Graph, class DirectedS>
void save_edges(Archive& ar, Graph const& g, DirectedS)
{
typedef typename Graph::process_group_type
process_group_type;
typedef typename process_group_type::process_id_type
process_id_type;
typedef typename graph_traits<
Graph>::vertex_descriptor vertex_descriptor;
typedef typename Graph::edge_property_type edge_property_type;
int E = num_edges(g);
ar << BOOST_SERIALIZATION_NVP(E);
// For *directed* graphs, we can just save
// the edge list and be done.
//
// For *bidirectional* graphs, we need to also
// save the "vertex_in_edges" property map,
// because it might contain in-edges that
// are not locally owned.
BGL_FORALL_EDGES_T(e, g, Graph)
{
vertex_descriptor src(source(e, g));
vertex_descriptor tgt(target(e, g));
typename vertex_descriptor::local_descriptor_type
local_u(local(src));
typename vertex_descriptor::local_descriptor_type
local_v(local(tgt));
process_id_type target_owner = owner(tgt);
using serialization::make_nvp;
ar << make_nvp("source", unsafe_serialize(local_u));
ar << make_nvp("target_owner", target_owner);
ar << make_nvp("target", unsafe_serialize(local_v));
maybe_save_properties(
ar, "edge_property"
, static_cast<edge_property_type const&>(get(edge_all_t(), g, e))
);
maybe_save_property_ptr(ar, e, DirectedS());
}
save_in_edges(ar, g, DirectedS());
}
}} // namespace detail::parallel
template <PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
template <class IStreamConstructibleArchive>
void PBGL_DISTRIB_ADJLIST_TYPE::load(std::string const& filename)
{
process_group_type pg = process_group();
process_id_type id = process_id(pg);
synchronize(pg);
std::vector<int> disk_files = detail::parallel::available_process_files(filename);
std::sort(disk_files.begin(), disk_files.end());
// Negotiate which process gets which file. Serialized.
std::vector<int> consumed_files;
int picked_file = -1;
if (id > 0)
receive_oob(pg, id-1, 0, consumed_files);
std::sort(consumed_files.begin(), consumed_files.end());
std::vector<int> available_files;
std::set_difference(
disk_files.begin(), disk_files.end()
, consumed_files.begin(), consumed_files.end()
, std::back_inserter(available_files)
);
if (available_files.empty())
boost::throw_exception(std::runtime_error("no file available"));
// back() used for debug purposes. Making sure the
// ranks are shuffled.
picked_file = available_files.back();
# ifdef PBGL_SERIALIZE_DEBUG
std::cout << id << " picked " << picked_file << "\n";
# endif
consumed_files.push_back(picked_file);
if (id < num_processes(pg) - 1)
send_oob(pg, id+1, 0, consumed_files);
std::string local_filename = filename + "/" +
lexical_cast<std::string>(picked_file);
std::ifstream in(local_filename.c_str(), std::ios_base::binary);
IStreamConstructibleArchive ar(in);
detail::parallel::graph_loader<
graph_type, IStreamConstructibleArchive, InVertexListS
> loader(*this, ar);
# ifdef PBGL_SERIALIZE_DEBUG
std::cout << "Process " << id << " done loading.\n";
# endif
synchronize(pg);
}
template <PBGL_DISTRIB_ADJLIST_TEMPLATE_PARMS>
template <class OStreamConstructibleArchive>
void PBGL_DISTRIB_ADJLIST_TYPE::save(std::string const& filename) const
{
typedef typename config_type::VertexListS vertex_list_selector;
process_group_type pg = process_group();
process_id_type id = process_id(pg);
if (filesystem::exists(filename) && !filesystem::is_directory(filename))
boost::throw_exception(std::runtime_error("entry exists, but is not a directory"));
filesystem::remove_all(filename);
filesystem::create_directory(filename);
synchronize(pg);
std::string local_filename = filename + "/" +
lexical_cast<std::string>(id);
std::ofstream out(local_filename.c_str(), std::ios_base::binary);
OStreamConstructibleArchive ar(out);
using serialization::make_nvp;
typename process_group_type::process_size_type num_processes_ = num_processes(pg);
ar << make_nvp("num_processes", num_processes_);
ar << BOOST_SERIALIZATION_NVP(id);
ar << make_nvp("mapping", this->distribution().mapping());
int V = num_vertices(*this);
ar << BOOST_SERIALIZATION_NVP(V);
BGL_FORALL_VERTICES_T(v, *this, graph_type)
{
local_vertex_descriptor local_descriptor(local(v));
detail::parallel::maybe_save_local_descriptor(
ar, local_descriptor, vertex_list_selector());
detail::parallel::maybe_save_properties(
ar, "vertex_property"
, static_cast<vertex_property_type const&>(get(vertex_all_t(), *this, v))
);
}
detail::parallel::save_edges(ar, *this, directed_selector());
ar << make_nvp("distribution", this->distribution());
}
} // namespace boost
#endif // BOOST_GRAPH_DISTRIBUTED_ADJLIST_SERIALIZATION_070925_HPP